Transposable Elements Methods and Protocols /
| مؤلف مشترك: | |
|---|---|
| مؤلفون آخرون: | , |
| الملخص: | XII, 382 p. 65 illus., 60 illus. in color. text |
| اللغة: | الإنجليزية |
| منشور في: |
New York, NY :
Springer US : Imprint: Humana,
2023.
|
| الطبعة: | 1st ed. 2023. |
| سلاسل: | Methods in Molecular Biology,
2607 |
| الموضوعات: | |
| الوصول للمادة أونلاين: | https://doi.org/10.1007/978-1-0716-2883-6 |
| التنسيق: | الكتروني كتاب |
جدول المحتويات:
- An overview of best practices for transposable element identification, classification and annotation in eukaryotic genomes
- Assembly-free annotation and quantification of transposable elements with dnaPipeTE
- Best practice for the identification of horizontally transferred transposons
- Genotyping of transposable elements insertions segregating in the human populations using short-read re-alignments
- A Pangenome approach to detect and genotype TE insertion polymorphisms.0 Experimental validation of transposable element insertions using the Polymerase Chain Reaction (PCR)
- Quantification of LINE-1 RNA expression from bulk RNA-seq using L1EM
- Genome-wide profiling of L1 DNA methylation by bs-ATLAS-seq
- Nanopore epigenomic analysis of transposable element DNA modifications
- Targeted resequencing and methylation analysis of L1 elements by nanopore sequencing
- Inferring protein-DNA binding profiles at interspersed repeats using HiChIP and PatChER
- Affinity-based Interactome Analysis of Endogenous LINE-1 Macromolecules
- LINE-1 retrotransposition assays in embryonic stem cells
- Detecting somatic transposable element insertions in Drosophila tissues
- Precise and scarless insertion of transposable elements by Cas9-mediated genome engineering
- Epigenetic editing of transposable and repetitive elements
- Using CRISPR to investigate the regulatory activity of transposable elements. .