RNA Structure and Dynamics

Bibliographic Details
Corporate Author: SpringerLink (Online service)
Other Authors: Ding, Jienyu (Editor), Stagno, Jason R. (Editor), Wang, Yun-Xing (Editor)
Summary:XI, 254 p. 53 illus.
text
Language:English
Published: New York, NY : Springer US : Imprint: Humana, 2023.
Edition:1st ed. 2023.
Series:Methods in Molecular Biology, 2568
Subjects:
Online Access:https://doi.org/10.1007/978-1-0716-2687-0
Format: Electronic Book
Table of Contents:
  • Co-transcriptional Assembly and Native Purification of Large RNA-RNA Complexes for Structural Analyses
  • Probing RNA Structures and Interactions using Fluorescence Lifetime Analyses
  • Characterizing Fluorescence Properties of Turn-on RNA Aptamers
  • Probing Transient Riboswitch Structures via Single Molecule Accessibility Analysis
  • Isothermal Titration Calorimetry Analysis of a Cooperative Riboswitch using an Interdependent-Sites Binding Model
  • Application of Molecular Dynamics to Expand Docking Program’s Exploratory Capabilities and to Evaluate Its Predictions
  • Exploring the Binding Process of Cognate Ligand to add Adenine Riboswitch Aptamer by using Explicit Solvent Molecular Dynamics (MD) Simulation
  • Prediction of Dynamic RBP-RNA Interactions using PrismNet
  • High-resolution Atomic Force Microscopy Imaging of RNA molecules in solution
  • 3D Structural Analysis of Long Non-coding RNA by Small Angle X-ray Scattering and Computational Modeling
  • Combining Biophysical Methods for Structure-function Analyses of RNA in Solution
  • Near-Atomic Resolution Cryo-EM Image Reconstruction of RNA
  • Auto-DRRAFTER: Automated RNA Modeling Based on Cryo-EM Density
  • X-ray Crystallography to Study Conformational Changes in a TPP Riboswitch
  • Preparation of RNA Microcrystals for Serial Femtosecond Crystallography Experiments
  • Mix-and-Inject Serial Femtosecond Crystallography to Capture RNA Riboswitch Intermediates.