Functional Analysis of Long Non-Coding RNAs Methods and Protocols /

Bibliographic Details
Corporate Author: SpringerLink (Online service)
Other Authors: Cao, Haiming (Editor)
Summary:XIII, 351 p. 64 illus., 54 illus. in color.
text
Language:English
Published: New York, NY : Springer US : Imprint: Humana, 2021.
Edition:1st ed. 2021.
Series:Methods in Molecular Biology, 2254
Subjects:
Online Access:https://doi.org/10.1007/978-1-0716-1158-6
Format: Electronic Book
Table of Contents:
  • Bioinformatics Approaches for Functional Prediction of Long Non-Coding RNAs
  • Visualization of lncRNA and mRNA Structure Models within the Integrative Genomics Viewer
  • RNA Coding Potential Prediction Using Alignment-Free Logistic Regression Model
  • Classification of Long Non-Coding RNAs by K-mer Content
  • Genome-Wide Computational Analysis and Validation of Potential Long Non-Coding RNA-Mediated DNA-DNA:RNA Triplexes in the Human Genome
  • Using INFERNO to Infer the Molecular Mechanisms Underlying Non-Coding Genetic Associations
  • A Bioinformatic Pipeline to Integrate GWAS and eQTL Datasets to Identify Disease Relevant Human Long Non-Coding RNAs
  • AnnoLnc: A One-Stop Portal to Systematically Annotate Novel Human Long Non-Coding RNAs
  • Annotation of Full-Length Long Non-Coding RNAs with Capture Long-Read Sequencing (CLS)
  • Single-Cell Analysis of Long Non-Coding RNAs (lncRNAs) in Mouse Brain Cells
  • Detection and Characterization of Ribosome-Associated Long Non-Coding RNAs
  • Analysis ofAnnotated and Unannotated Long Non-Coding RNAs from Exosome Subtypes Using Next-Generation RNA Sequencing
  • DMS-MaPseq for Genome-Wide or Targeted RNA Structure Probing In Vitro and In Vivo
  • Labeling and Purification of Temporally Expressed RNAs during the S-Phase of the Cell Cycle in Living Cells
  • A Quick Immuno-FISH Protocol for Detecting RNAs, Proteins, and Chromatin Modifications
  • M(R)apping RNA-Protein Interactions
  • In Vivo Administration of Therapeutic Antisense Oligonucleotides
  • CRISPR-Mediated Mutagenesis of Long Non-Coding RNAs
  • In Vivo CRISPR/Cas9-Based Targeted Disruption and Knock-In of a Long Non-Coding RNA
  • Genome-Scale Perturbation of Long Non-Coding RNA Expression Using CRISPR Interference
  • In Vivo Functional Analysis of Non-Conserved Human lncRNAs Using a Humanized Mouse Model.